Commits · a26fed3d71bbea90f6c4c3f1ed5fb693ec39c3c7 · phylo / fastcodeml

Browse files

May 19, 2016
- BEB correction for the case when no fg branch is marked in the nwk file · a26fed3d
  omid authored May 19, 2016
  
  a26fed3d
Mar 11, 2016
- some cosmetic changes · 9c808087
  omid authored Mar 11, 2016
  
  9c808087
- More changes on the final tree report · bf5c996a
  omid authored Mar 11, 2016
  
  bf5c996a
- some changes in command line option comments as well as final printed · 57979c06
  omid authored Mar 11, 2016
  57979c06
- correct version (initial num of cores) · c0b2d7bb
  omid authored Mar 11, 2016
  
  c0b2d7bb
- initial num of threads (cont.) · 621fd2b5
  omid authored Mar 11, 2016
  
  621fd2b5
- more correction on initial num of threads · 25c70bf7
  omid authored Mar 11, 2016
  
  25c70bf7
- some changes in final timing reports and initial number of threads to · 26be0e27
  omid authored Mar 11, 2016
  26be0e27
- more final tree report corrections · 21a4d11a
  omid authored Mar 11, 2016
  
  21a4d11a
- Some correction in reporting the final tree (based on the chosen · d6205ef5
  omid authored Mar 11, 2016
  d6205ef5
Mar 02, 2016
- Fortmatting fast.cpp created issues. reverting to the head version of · 113d641a
  omid authored Mar 2, 2016
  113d641a
Feb 29, 2016
- merging master-eval (finished) · 42e91b83
  omid authored Feb 29, 2016
  
  42e91b83
Dec 03, 2015
- remove nthreads message, thread number otputed twice · f00fdf26
  Iakov Davydov authored Dec 3, 2015
  
  f00fdf26
- fix nthreads output (correct indentations) · 60998f79
  Iakov Davydov authored Dec 3, 2015
  
  60998f79
- apply formatting to 5e1e24c9 · d640fabf
  Iakov Davydov authored Dec 3, 2015
  
  d640fabf
- format all the code · 654e04d9
  Iakov Davydov authored Dec 3, 2015
  
  654e04d9
Mar 26, 2015
- remove trailing spaces from .cpp and .h files · c3d6fe8a
  Iakov Davydov authored Mar 26, 2015
  
  c3d6fe8a
- spaces to tabs · 2589ab54
  Iakov Davydov authored Mar 26, 2015
  
  2589ab54
- dos2unix all files · 5e1e24c9
  Iakov Davydov authored Mar 26, 2015
  
  5e1e24c9
Jun 27, 2014
- 1.2.0 - BG/Q compatibility (V.Keller, K.Ali) · 4b0557fe
  kali authored Jun 27, 2014
  4b0557fe
Mar 27, 2014
- -np (no paraller) readded · 5a383e68
  akalantz authored Mar 27, 2014
  5a383e68
Feb 24, 2014
- Few corrections to CMakeLists and NewickGrammar to accept pipe character also. · 2bf443bb
  mvalle authored Feb 24, 2014
  2bf443bb
Feb 06, 2014
- Version added in the help message - few dispalay changes · a6eaa3d7
  akalantz authored Feb 6, 2014
  a6eaa3d7
Jan 30, 2014
- Version display added · d1fba584
  akalantz authored Jan 30, 2014
  d1fba584
Jan 23, 2014
- branch lenghts fixed attribute added (-bl) · 3b60da8f
  akalantz authored Jan 23, 2014
  3b60da8f
Jan 21, 2014
- warning message for unrooted tree and codeML algorithm is set as the default one · 9fafe16c
  akalantz authored Jan 21, 2014
  9fafe16c
Dec 17, 2013
- Add number_threads + change output file · 94b0ddc0
  akalantz authored Dec 17, 2013
  94b0ddc0
May 29, 2013
- Added exception for LRT not satisfied. · 64f47277
  mvalle authored May 29, 2013
  64f47277
Feb 14, 2013
- Added immediate check on the optimizer code. · 363e5706
  mvalle authored Feb 14, 2013
  363e5706
Feb 07, 2013
- Implemented CPV scaling · 74cadc80
  mvalle authored Feb 7, 2013
  74cadc80
Feb 05, 2013
- Added guard against infinites in results · 22133b10
  mvalle authored Feb 5, 2013
  22133b10
Feb 01, 2013
- Different seed for different MPI processes. · 177d77f5
  mvalle authored Feb 1, 2013
  177d77f5
Jan 28, 2013
- Changed variable initialization logic. · fa0dfd72
  mvalle authored Jan 28, 2013
  fa0dfd72
Jan 24, 2013
- Fixed various typos in doxygen comments and in two exception messages. · 94715e19
  mvalle authored Jan 24, 2013
  94715e19
- Updated doxygen to 1.8.3.1 · 0d0f30a0
  mvalle authored Jan 24, 2013
  0d0f30a0
Jan 18, 2013
- Minor improvements to code and comments · 38c02be3
  mvalle authored Jan 18, 2013
  38c02be3
Jan 15, 2013
- Fixed read for specific msa (specie name alone on a line) · 736673e2
  mvalle authored Jan 15, 2013
  736673e2
Jan 14, 2013
- Restricted Doxygen to *.h and *.cpp files · 58c7c0a0
  mvalle authored Jan 14, 2013
  58c7c0a0
Jan 11, 2013
- Fixed Doxyfile. Fixed Doxygen comment in source. · 20c6890a
  mvalle authored Jan 11, 2013
  20c6890a
- Corrected comment · f509e265
  mvalle authored Jan 11, 2013
  f509e265