Commits · ee5c527a84779997e3f871575402ea2d1cbd93e4 · phylo / fastcodeml

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Dec 12, 2012
- Changed message output to cout from cerr. · ee5c527a
  mvalle authored Dec 12, 2012
  ee5c527a
Dec 06, 2012
- Changed output of sites under positive selection so the site number starts from 1 and not zero. · a021808c
  mvalle authored Dec 6, 2012
  a021808c
Dec 04, 2012
- Added print parameters. · a1a6de2f
  mvalle authored Dec 4, 2012
  a1a6de2f
Nov 28, 2012
- Removed commented out test code (still BEB test code is still in place) · 357871ad
  mvalle authored Nov 28, 2012
  357871ad
Nov 24, 2012
- Removed testing code · 0b424b4e
  mvalle authored Nov 24, 2012
  0b424b4e
Oct 29, 2012
- Added mapping sites to original number · 85489f15
  mvalle authored Oct 29, 2012
  85489f15
- Cleaning · c34560cb
  mvalle authored Oct 29, 2012
  c34560cb
Oct 25, 2012
- Refactory changes (especially in Ming2) · ead0e2ec
  mvalle authored Oct 25, 2012
  ead0e2ec
Oct 18, 2012
- Added check for zero valid sites · 8ce34773
  mvalle authored Oct 18, 2012
  8ce34773
Oct 14, 2012
- Added exception for bad_alloc · 8fb3a6c0
  mvalle authored Oct 14, 2012
  8fb3a6c0
Oct 12, 2012
- Code restructuring · 6856879a
  mvalle authored Oct 12, 2012
  6856879a
Oct 10, 2012
- Added more code for BEB · f26764f5
  mvalle authored Oct 10, 2012
  f26764f5
Oct 09, 2012
- Cleared unused or moved code. · 038bec91
  mvalle authored Oct 9, 2012
  038bec91
Oct 02, 2012
- As default the multiplication with codon frequencies has been moved up one level · bdbb5567
  mvalle authored Oct 2, 2012
  bdbb5567
Sep 24, 2012
- Corrected bad error handling for MPI initialization · e42eeedc
  mvalle authored Sep 24, 2012
  e42eeedc
Apr 02, 2012
- Fixed warning for Win 64 bits compilation. · 4622832d
  mvalle authored Apr 2, 2012
  4622832d
Feb 21, 2012
- Fixed doxygen comments · 63c6a6f7
  mvalle authored Feb 21, 2012
  63c6a6f7
- More efficient initialization of loops using iterators · 43dc07a7
  mvalle authored Feb 21, 2012
  43dc07a7
Feb 19, 2012
- Removed old-style casts · e9fa3d68
  mvalle authored Feb 19, 2012
  e9fa3d68
Jan 20, 2012
- Changed few unsigned int into size_t · fdaf85c9
  mvalle authored Jan 20, 2012
  fdaf85c9
Dec 21, 2011
- Used everywhere elementWiseMult · a5ff2958
  mvalle authored Dec 21, 2011
  a5ff2958
Dec 06, 2011
- Added comments and cleaned the MPI part · cc5981c6
  mvalle authored Dec 6, 2011
  cc5981c6
Oct 05, 2011
- Small optimizations suggested by icc. Added copy constructor to TreeNode · 0da9f251
  mvalle authored Oct 5, 2011
  0da9f251
May 18, 2011
- Changed some uint to size_t. Added switch to disable OpenMP in compilation · 3d6eed97
  mvalle authored May 18, 2011
  3d6eed97
May 06, 2011
- · c080a219
  hschabau authored May 6, 2011
  c080a219