Commits · ee5c527a84779997e3f871575402ea2d1cbd93e4 · phylo / fastcodeml

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Dec 12, 2012
- Changed message output to cout from cerr. · ee5c527a
  mvalle authored Dec 12, 2012
  ee5c527a
Nov 28, 2012
- Removed commented out test code (still BEB test code is still in place) · 357871ad
  mvalle authored Nov 28, 2012
  357871ad
Oct 25, 2012
- Refactory changes (especially in Ming2) · ead0e2ec
  mvalle authored Oct 25, 2012
  ead0e2ec
Aug 23, 2012
- Small improvements to reduce warnings from compilers · b26f4d29
  mvalle authored Aug 23, 2012
  b26f4d29
Jul 03, 2012
- Added option to set relative error on lnl as stopping criteria. · 49cbf98c
  mvalle authored Jul 3, 2012
  49cbf98c
Feb 28, 2012
- New exception message formatting using ostringstream. · 2fa03b93
  mvalle authored Feb 28, 2012
  2fa03b93
Feb 22, 2012
- Changed tolerance in isDifferent (from 1e-7 to 1e-9) speed is worse, but accuracy is better. · 38a12daf
  mvalle authored Feb 22, 2012
  38a12daf
Feb 21, 2012
- More efficient initialization of loops using iterators · 43dc07a7
  mvalle authored Feb 21, 2012
  43dc07a7
Feb 19, 2012
- Removed old-style casts · e9fa3d68
  mvalle authored Feb 19, 2012
  e9fa3d68
Feb 13, 2012
- Extracted forest export functions as friend class · cad5057b
  mvalle authored Feb 13, 2012
  cad5057b
Feb 10, 2012
- Fixed compilation issues under PGI compiler · 12a29306
  mvalle authored Feb 10, 2012
  12a29306
Jan 24, 2012
- Fixed computation with null eigenvalues. · 8cbe1a76
  mvalle authored Jan 24, 2012
  8cbe1a76
Jan 20, 2012
- Changed few unsigned int into size_t · fdaf85c9
  mvalle authored Jan 20, 2012
  fdaf85c9
Jan 11, 2012
- Added CodeML optimizer. · cef74b37
  mvalle authored Jan 11, 2012
  cef74b37