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  • 9ec41ac41712996963f7b10ebaa8fe43bf32daae
  • master default protected
  • Lucas_optimizer
  • aggr
  • massive
  • master-eval
  • multi
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Created with Raphaël 2.2.05Feb12Dec875432130Nov272330Oct291615823Jul2217161510987626Jun25242322191817161512111085328May272622212019181613121187530Apr2827242120171615141310983130Mar27262513121110653227Feb262524232019171294Sep27Jun167Apr27Mar26251813121128Feb246330Jan29232120Dec17162Jul20Jun429May1530Apr26252423221610922Feb201475128Jan2418171514111087228Dec24211918151312116543130Nov28242218159629Oct2519181412111095228Sep26252421181413121110428Aug2321104327Jul2018121196325Jun22191816May223Apr1312114226Mar231513928Feb22211917161513103231Jan262420119223Dec2120191613762130Nov231817157428Oct26242320181754328Sep2722201930Aug4329Jul27251918118620Jun11130May231816126some update in install and readme documentation + minor changes to makeSmall corrections to comply with clang on macmore complete test version :more complete test version:more complete test version :more complete test version :More complete test version:more complete test version:more complete test version: More complete test version (support for iterating on branches - internalreport number unique site for aggregation, not totalaggraggrfirst test version (reading fg branches from file) fix formattingoutput number of aggregated codons only in verbose modeoutput aggregation moderemove nthreads message, thread number otputed twiceremove nthreads message, thread number otputed twicefix nthreads output (correct indentations)fix nthreads output (correct indentations)fix minor indented formattingfix fastcodeml output (redo 7a445d17)retrive protoptype for the setLeaveProb & fix formattingformatting from a7c7aeefix multiple angular brackets and some comments formattingfix angular braces in the style filefix multiple angular brackets and some comments formattingfix angular braces in the style fileapply formatting to 5e1e24cfix format.sh to not format nlopt.hfix format.sh to not format nlopt.hrevert nlopt formatted badlyformat all the code & revert simpleopt (broken in 2589ab and c3d6fe)code formatting scriptsformat all the codecode formatting scriptsonly create mMapCodonPairToDistance if aggregation is usedaggregate=2, remove 3-codon distancefind maximum minimal edit distance for s codon vectorcreate codon pair distance mapfix formatting in simpleopt (broken in 2589ab and c3d6fe)