Commits · f52bff017c82288233072f5a0ffa1f3b58fcf7db · phylo / fastcodeml

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Jun 07, 2016
- Corrected issue 35 (output file not found) · f52bff01
  oshahmir authored Jun 7, 2016
  
  f52bff01
Dec 03, 2015
- fix multiple angular brackets and some comments formatting · a7c7aee6
  Iakov Davydov authored Dec 3, 2015
  
  a7c7aee6
- apply formatting to 5e1e24c9 · d640fabf
  Iakov Davydov authored Dec 3, 2015
  
  d640fabf
- format all the code · 654e04d9
  Iakov Davydov authored Dec 3, 2015
  
  654e04d9
Mar 26, 2015
- remove trailing spaces from .cpp and .h files · c3d6fe8a
  Iakov Davydov authored Mar 26, 2015
  
  c3d6fe8a
- spaces to tabs · 2589ab54
  Iakov Davydov authored Mar 26, 2015
  
  2589ab54
- dos2unix all files · 5e1e24c9
  Iakov Davydov authored Mar 26, 2015
  
  5e1e24c9
May 15, 2013
- Clarified comments. · 3f15b4e8
  mvalle authored May 15, 2013
  3f15b4e8
Apr 30, 2013
- Added comments. Cleaned few datatypes · c96fbb3d
  mvalle authored Apr 30, 2013
  c96fbb3d
Feb 20, 2013
- Added hyp selection also for MPI jobs · a8f4ae3e
  mvalle authored Feb 20, 2013
  a8f4ae3e
Feb 05, 2013
- Added guard against infinites in results · 22133b10
  mvalle authored Feb 5, 2013
  22133b10
Feb 01, 2013
- Different seed for different MPI processes. · 177d77f5
  mvalle authored Feb 1, 2013
  177d77f5
Jan 28, 2013
- Changed variable initialization logic. · fa0dfd72
  mvalle authored Jan 28, 2013
  fa0dfd72
Jan 24, 2013
- Fixed various typos in doxygen comments and in two exception messages. · 94715e19
  mvalle authored Jan 24, 2013
  94715e19
- Updated doxygen to 1.8.3.1 · 0d0f30a0
  mvalle authored Jan 24, 2013
  0d0f30a0
Jan 18, 2013
- Minor improvements to code and comments · 38c02be3
  mvalle authored Jan 18, 2013
  38c02be3
Jan 07, 2013
- Changed LRT print format for MPI · d829690e
  mvalle authored Jan 7, 2013
  d829690e
Jan 02, 2013
- Added variable print also for MPI · f8586a87
  mvalle authored Jan 2, 2013
  f8586a87
Dec 19, 2012
- Print annotated tree with the internal branch number. · 82d4e2bc
  mvalle authored Dec 19, 2012
  82d4e2bc
- Fixed messages from MPI execution. · 3b7e20cb
  mvalle authored Dec 19, 2012
  3b7e20cb
Dec 15, 2012
- Ordered output sites under positive selection. · 5471b672
  mvalle authored Dec 15, 2012
  5471b672
Dec 12, 2012
- Changed message output to cout from cerr. · ee5c527a
  mvalle authored Dec 12, 2012
  ee5c527a
Dec 06, 2012
- Changed output of sites under positive selection so the site number starts from 1 and not zero. · a021808c
  mvalle authored Dec 6, 2012
  a021808c
Dec 03, 2012
- Fixed bug that appears in beb only using -nr flag. · 2d27a5b2
  mvalle authored Dec 3, 2012
  2d27a5b2
Nov 24, 2012
- Removed testing code · 0b424b4e
  mvalle authored Nov 24, 2012
  0b424b4e
Nov 18, 2012
- Added option -ps --no-pre-stop Don't stop H0 maximization if it cannot satisfy LRT (default: stop) · 5f1d3656
  mvalle authored Nov 18, 2012
  5f1d3656
Oct 25, 2012
- Refactory changes (especially in Ming2) · ead0e2ec
  mvalle authored Oct 25, 2012
  ead0e2ec
Oct 18, 2012
- Fixed bug in MPI results print · 331282bd
  mvalle authored Oct 18, 2012
  331282bd
- Added check for zero valid sites · 8ce34773
  mvalle authored Oct 18, 2012
  8ce34773
Oct 14, 2012
- Added exception for bad_alloc · 8fb3a6c0
  mvalle authored Oct 14, 2012
  8fb3a6c0
Oct 12, 2012
- Code restructuring · 6856879a
  mvalle authored Oct 12, 2012
  6856879a
Oct 11, 2012
- Changed comments, added cast · 6a482168
  mvalle authored Oct 11, 2012
  6a482168
Oct 10, 2012
- Finished fixing MPI for BEB. · 5e5adff6
  mvalle authored Oct 10, 2012
  5e5adff6
- Added more code for BEB · f26764f5
  mvalle authored Oct 10, 2012
  f26764f5
Oct 09, 2012
- Cleared unused or moved code. · 038bec91
  mvalle authored Oct 9, 2012
  038bec91
Oct 02, 2012
- As default the multiplication with codon frequencies has been moved up one level · bdbb5567
  mvalle authored Oct 2, 2012
  bdbb5567
Sep 28, 2012
- Added one sanity check · ec3949a1
  mvalle authored Sep 28, 2012
  ec3949a1
Sep 25, 2012
- Fixed various doxygen comments and the Doxyfile parameters to comment all parts of the code · 5dc4c022
  mvalle authored Sep 25, 2012
  5dc4c022
Sep 24, 2012
- Corrected bad error handling for MPI initialization · e42eeedc
  mvalle authored Sep 24, 2012
  e42eeedc
Jul 18, 2012
- Changed dependency list structure (added accessor functions) · 90c468fd
  mvalle authored Jul 18, 2012
  90c468fd