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Commit e828dfbc authored by Michael Baudis's avatar Michael Baudis
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default genome change to 36

parent a01d8862
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......@@ -7,7 +7,7 @@ var bodyParser = require('body-parser');
var mongo = require('mongodb');
var mongojs = require('mongojs')
var db = mongojs('devmaster.vital-it.ch:27017/arraymap', ['samples'])
var db = mongojs('localhost:27017/arraymap', ['samples'])
//var monk = require('monk');
//var db = monk('devmaster.vital-it.ch:27017/arraymap');
......
......@@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){
});
var referenceMap = {
'GRCh38': 'SEGMENTS_HG38',
'GRCh37': 'SEGMENTS_HG19',
'GRCh36': 'SEGMENTS_HG18'
'GRCh37': 'SEGMENTS_HG19',
'GRCh38': 'SEGMENTS_HG38',
};
//correspondence to arraymap class
......@@ -22,7 +22,7 @@ var alternateBasesMap = {
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var defaultReference = 'GRCh38';
var defaultReference = 'GRCh36';
function checkPreconditions(params) {
......
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