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Michael Baudis
ga4gh-arraymap
Commits
e828dfbc
Commit
e828dfbc
authored
Jul 8, 2016
by
Michael Baudis
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default genome change to 36
parent
a01d8862
Branches
master
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2 changed files
app/node-app/app.js
+1
-1
1 addition, 1 deletion
app/node-app/app.js
app/node-app/arraymap-beacon/v0.4/beacon-query.js
+5
-5
5 additions, 5 deletions
app/node-app/arraymap-beacon/v0.4/beacon-query.js
with
6 additions
and
6 deletions
app/node-app/app.js
+
1
−
1
View file @
e828dfbc
...
...
@@ -7,7 +7,7 @@ var bodyParser = require('body-parser');
var
mongo
=
require
(
'
mongodb
'
);
var
mongojs
=
require
(
'
mongojs
'
)
var
db
=
mongojs
(
'
devmaster.vital-it.ch
:27017/arraymap
'
,
[
'
samples
'
])
var
db
=
mongojs
(
'
localhost
:27017/arraymap
'
,
[
'
samples
'
])
//var monk = require('monk');
//var db = monk('devmaster.vital-it.ch:27017/arraymap');
...
...
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app/node-app/arraymap-beacon/v0.4/beacon-query.js
+
5
−
5
View file @
e828dfbc
...
...
@@ -9,9 +9,9 @@ info['info']['info']['datasets'].forEach(function(dataset){
});
var
referenceMap
=
{
'
GRCh38
'
:
'
SEGMENTS_HG38
'
,
'
GRCh37
'
:
'
SEGMENTS_HG19
'
,
'
GRCh36
'
:
'
SEGMENTS_HG18
'
'
GRCh37
'
:
'
SEGMENTS_HG19
'
,
'
GRCh38
'
:
'
SEGMENTS_HG38
'
,
};
//correspondence to arraymap class
...
...
@@ -22,7 +22,7 @@ var alternateBasesMap = {
// By default doe Maximilien takes Reference 37. https://github.com/maximilianh/ucscBeacon/blob/master/help.txt
//TODO Should it be the same as Maximilen? Is it specified by beacon documentaiton?
var
defaultReference
=
'
GRCh3
8
'
;
var
defaultReference
=
'
GRCh3
6
'
;
function
checkPreconditions
(
params
)
{
...
...
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