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May 24, 2018
- Optimisation for mutithreaded uncompressed bgzf · a13ac99e
  Rob Davies authored May 18, 2018
  a13ac99e
- Faster writing of uncompressed data for builds without libdeflate · f49e916e
  Rob Davies authored May 18, 2018
  
  f49e916e
- Improve hwrite efficiency for large writes when the buffer is empty · aba6ca46
  Rob Davies authored Apr 18, 2018
  aba6ca46
- Only signal input queue not full if it really is not full · 49b6d959
  Rob Davies authored Apr 18, 2018
  
  49b6d959
- Only broadcast result_avail if it's the next one to be picked up · 979e6f21
  Rob Davies authored Apr 18, 2018
  979e6f21
- Fix incorrect bracket placement · 699ed53d
  Rob Davies authored May 24, 2018
  699ed53d
- Compiler warning whack-a-mole. · 96defa1c
  James Bonfield authored May 24, 2018
  96defa1c
May 18, 2018
- Fix gcc 8.1 warnings · 55d7bef5
  Rob Davies authored May 4, 2018
  55d7bef5
May 16, 2018
- New interfaces to add or update bam integer, float and array aux tags (#694) · bceff25a
  daviesrob authored May 16, 2018
  bceff25a
Apr 30, 2018
- Undo accidental loss of "static" keyword. · 19a66ce8
  James Bonfield authored Apr 30, 2018
  
  19a66ce8
- Small speed up to cram indexing. · 53177bfb
  James Bonfield authored Apr 30, 2018
  53177bfb
Apr 27, 2018
- Fixes a bug in the creation of the multi-region iterator, that · eeda089c
  Valeriu Ohan authored Apr 19, 2018
  eeda089c
Apr 26, 2018
- Bugfix in VCF record REF length update · 71b00a89
  Petr Danecek authored Apr 26, 2018
  71b00a89
- Make bcf_hdr_set_samples(..,NULL,..) work also in write mode. Resolves #692 · ac9c273d
  Petr Danecek authored Apr 26, 2018
  
  ac9c273d
Apr 24, 2018
- Update internal state on synced reader's seek · 5fae73fd
  Petr Danecek authored Apr 24, 2018
  5fae73fd
Apr 19, 2018
- Replace tabs with spaces to the next tab stop (multiples of 8). · f1000743
  James Bonfield authored Apr 19, 2018
  f1000743
Apr 18, 2018
- Fixes `cram_pseek` function by clearing the `ctr_mt` pointer. · c4a7c728
  Valeriu Ohan authored Apr 17, 2018
  c4a7c728
Apr 11, 2018
- Improves the error reporting. · f31f2c00
  Valeriu Ohan authored Apr 11, 2018
  
  f31f2c00
Apr 05, 2018
- fail is uncompressed input file is detected · e90ad09e
  jrayner authored Apr 5, 2018
  
  e90ad09e
Apr 04, 2018
- allow integrity check on files without .gz suffix · 830e0225
  jrayner authored Apr 4, 2018
  
  830e0225
- add integrity check option · ef895567
  jrayner authored Apr 4, 2018
  
  ef895567
Apr 03, 2018
- Merge version number bump and NEWS file from master · 5b60dd3f
  Rob Davies authored Apr 3, 2018
  
  5b60dd3f
- Release 1.8 · be22a2a1
  Rob Davies authored Apr 3, 2018
  
  View commits for tag 1.8 1.8
  
  be22a2a1
- More tweaks to cram threading. · 107e7d17
  James Bonfield authored Apr 3, 2018
  107e7d17
- Memory leak iterating multiple queries over cram · 651a936b
  rpetrovski authored Mar 29, 2018
  651a936b
Mar 29, 2018
- Prevent export of .appveyor.yml [minor] · 816a220c
  Rob Davies authored Mar 29, 2018
  
  816a220c
- Pass in desired compression level on bgzf_open · 6b85e52b
  Rob Davies authored Mar 29, 2018
  6b85e52b
Mar 28, 2018
- Add bgzip manual page and NEWS item · 2d5fa5df
  Rob Davies authored Mar 28, 2018
  2d5fa5df
- Add -l / --compress-level option to bgzip · effcb1e1
  Nathan T. Weeks authored Mar 26, 2018
  
  effcb1e1
Mar 26, 2018
- Improved round-trip support for NM and MD tags in CRAM. · a5dc7e00
  James Bonfield authored Mar 23, 2018
  a5dc7e00
Mar 21, 2018
- News for spring release. · 11813d54
  Andrew Whitwham authored Mar 20, 2018
  
  11813d54
Mar 15, 2018
- Suppress unused function warnings in kseq · 53241915
  Rob Davies authored Mar 15, 2018
  53241915
- Avoid unintended macro expansion in KSORT_INIT_GENERIC · b49bb2d7
  Rob Davies authored Mar 9, 2018
  b49bb2d7
- Fix use of (possibly) signed char with ctype functions · 738c16d2
  Rob Davies authored Mar 9, 2018
  738c16d2
- Turn off format warnings in appveyor for mingw-w64 · 5fef1be2
  Rob Davies authored Mar 8, 2018
  5fef1be2
- Change some thread workers to use return instead of pthread_exit · fc6a5f93
  Rob Davies authored Mar 8, 2018
  fc6a5f93
- Fix SunStudio compiler warnings · 2796b437
  Rob Davies authored Mar 8, 2018
  2796b437
- More general CRAM multi-threading fixes (not related to multi-slice). · 1c4acb41
  James Bonfield authored Mar 12, 2018
  1c4acb41
- Fixed trivial memory leak in test harness · 18931338
  James Bonfield authored Mar 9, 2018
  
  18931338
- Bug fixes to multi-slice containers (mostly threading related). · 6b6c8a3f
  James Bonfield authored Mar 9, 2018
  6b6c8a3f